rhizosphere as gut

rhizosphere is like an external gut. in both case bacteria/microbes break down organic matter into simpler compounds that the plant or person can absorb. there are 1000 fila (major groups of bacteria) the same 4 dominate the rhizosphere and the guts of mammals. are these the most ‘cooperative’ types of bacteria? human infant immune systems are less active then that of adults, enabling a wide range of bacteria to establish in our guts, similarly young plants release fewer defensive compounds into the soil than older ones, allowing a broad verity of microbes to colonise their rhizosphere. human breast milk contains sugars called …. which are compounds that babies can’t actually digest but they are specifically to feed a specific group of bacteria that need to be developed that help to calibrate the immunes system. young plants release sucrose into the soil to feed their new microbiomes. just as the bacteria in our gut out compete and attach invading pathogens, the microbes in the rhizosphere create a defensive ring out the root – plants feed certain bacteria so they can crowd out certain pathogenic microbes and fungi, they deploy chemical warfare, releasing poisons that suppress harmful microbes and encourage helpful ones.because plants immune system co-evolved with the rhizosphere, it can’t work any other way than long back and forth communication such as releasing hormones into the soil when it is being attacked above ground sound that certain bacteria can respond by releasing their own hormone which in turn then allows the plant to release defensive chemicals in its leaves and to shut stomatta pores so fungi can’t invade

luminous symbiotic bacteria – civil war battle Shiloh Tennessee 1862, angles glow. insect eating nemetodes invaded the wounds and regurgitated bacteria and the antibiotics would have killed the other pathogens. genome mining helps to discover new antibiotics in the bacteria that live with plants

  • we need healthy and diverse soil to find antibiotics

less diverse diets with less fibre + over use of antibiotic + excessive hygiene = damages out gut biomes, reducing the number of species they contain which harms our dietry health and immunes sytems

plants seem to be less capable of fighting of pahtogens when they grow in damaged soils with a low diversity of microbes. where soil has been harmed by too much fertiliser, pesticides or fungicides, eccessive ploughing or crushing by heavy machinery, their crys for help are more likely to be exploited by parasites and pests

  • disposes = medical term for the collapse of our gut community…. this word could be applied to the unravelling of any ecosystem? (says George M)

soils with rich and well balanced microbiome suppress pathogenic bacteria that cause disease in people, making the transmission of human diseases through food less likely

  • researchers are experimenting with the agricultural equivalent of faecal implants but with soil, just as doctors take stool samples from healthy people and implant them into the guts of unhealthy patients, implanting suppressive soil into unhealthy conducive ground could suppress pathogenic bacteria and fungi
  • drilosphere = earth worm zone.
  • Nitrates and phosphates – illuminates how our invisible systems work and flow

REFLECTIONS:

I want to find aesthetic ways to visualise the unseen nutrients and microbiome of soil… to do this I need to find two locations as my comparison points? maybe in Somerset?

Why make chemical crystal images? – maybe as a comparison tool? visual aid – but also to bring imagery to the nutrients we are and are not getting from food? how this is facilitated by microbiome!

still need to work out how a comparison of gut microbiomes and soil microbiomes can be used and designed for…

maybe the outcome is a film……. at this point the imagery is more important than directly comparing two sites… which means I should get images of the vits and mins we are difficent in… and also explore the 4 bacteria that are common in both soil and gut!

Four types of bacteria commonly found in both mammals and soil include:

  1. Bacillus subtilis: Bacillus subtilis is a common soil bacterium known for its ability to form endospores, which are resistant to harsh environmental conditions. It is also found in the gastrointestinal tract of mammals, including humans, where it can play a role in gut health.
  2. Escherichia coli (E. coli): While some strains of E. coli can be harmful and cause illness, others are a normal part of the gut microbiota in mammals, including humans. E. coli is also found in soil, where it can serve various ecological roles.
  3. Mycobacterium spp.: Mycobacteria are a group of bacteria that include species such as Mycobacterium tuberculosis and Mycobacterium leprae, which can cause diseases like tuberculosis and leprosy, respectively. However, many other species of mycobacteria are commonly found in soil and are also present in the microbiota of mammals.
  4. Pseudomonas spp.: Pseudomonas bacteria are widespread in soil and are known for their metabolic versatility and ability to degrade a wide range of organic compounds. Some species of Pseudomonas are also found as part of the normal microbiota in mammals, including humans.

soil and gut mythologies

The etymology of the word soil roots us back to Latin: “solium” which literally translates as ‘seat, chair or throne’.

AUTOCHTHONOUS
The Soil’s Offspring

Demeter, in Greek religion, daughter of the deities Cronus and Rhea, sister and consort of Zeus (the king of the gods), and goddess of agriculture. Her name indicates that she is a mother.

https://www.fu-berlin.de/en/presse/informationen/fup/2021/fup_21_008-boden-naturschutzstrategie/index.html

  • good website about soil understandings

Does Soil Contribute to the Human Gut Microbiome?

  • Human Microbiome Project in 2007, aiming at sequencing all microbes (eukaryotes, archaea, bacteria, viruses) inhabiting human body sites, the Human Microbiome Project has developed into a major field of biomedical research focussing mainly on the intestinal microbial community that plays a major role in human health and diseases [3,10].
  • The intestinal microbial community represents an ecosystem of a trillion microbial cells with an aggregate 9.9 million microbial genes across the fecal microbiome [11]. The greatest number of cells within the human gut is found in the colon which supports a diverse and dense population of microbes, dominated by anaerobes that utilize carbohydrates [12]. By comparison, the lowest number of cells found in the small intestine (Table 1) is due to properties that limit bacterial reproduction such as high levels of acids and antimicrobials [12]. 
  •  The colonization of the human gut starts at birth, with the rapid expansion of microbial diversity, influenced by endogenous and exogenous factors [3], such as human genetic variation as well as diet, infections, xenobiotics, and exposure to environmental microbial agents including the large plant and soil microbiome [3]. With respect to the numerous and diverse functions of the intestinal microbiome in human health, it is evident that it is also involved in numerous gastrointestinal (GI) and non-gastrointestinal diseases, such as obesity/metabolic syndrome, atherosclerosis/cardiovascular diseases, neurologic/psychiatric diseases and others [3]. It is therefore one of the most dynamic topics in biomedical research [3].
  • Soils existed globally a long time before mammals and hominids came into existence and are by far the most extensive natural microbial gene reservoir on earth

The nutritional values of some popular vegetables, from asparagus to spinach, have dropped significantly since 1950. A 2004 US study found important nutrients in some garden crops are up to 38% lower than there were at the middle of the 20th Century. On average, across the 43 vegetables analysed, calcium content declined 16%, iron by 15% and phosphorus by 9%. The vitamins riboflavin and ascorbic acid both dropped significantly, while there were slight declines in protein levels. Similar decreases have been observed in the nutrients present in wheat. What’s happening?

polarized microscopy

  1. Set Up the Microscope: Ensure that the polarizers, analyzer, and retardation plates are properly installed in the microscope. Adjust the alignment of the polarizers to achieve crossed polarization.
  2. Choose a Polarized Light Source: Select an appropriate polarized light source, such as a polarized filter or a specialized lamp. This will provide the necessary polarized light for sample illumination.
  3. Prepare the Sample: Prepare your sample by mounting it on a glass slide or other suitable substrate. Thin sections or transparent samples are ideal for polarized light microscopy.
  4. Adjust the Analyzer: Adjust the analyzer to control the intensity of the polarized light passing through the sample. By rotating the analyzer, you can enhance or diminish the contrast in the observed image.
  5. Analyze the Sample: Observe the sample under the polarized light microscope and analyze its optical properties. Look for birefringence, which manifests as color variations or patterns, indicating differences in refractive indices within the sample.
  6. Quantify the Retardation: If necessary, measure the retardation of the sample using specialized techniques such as conoscopic interference or compensators. This can provide quantitative information about the sample’s optical properties.

Polarized light microscopy offers a versatile and non-destructive method for studying a wide range of samples. Whether you are examining geological specimens, analyzing biological structures, or investigating the optical properties of materials, this technique provides valuable insights into the behavior of polarized light and its interaction with various substances.

Polarized light microscopy is a powerful technique used in various fields such as mineralogy, materials science, and biological sample analysis. It involves the use of polarized light to study the optical properties of samples, particularly their birefringence and anisotropy. Training and education in polarized light microscopy are essential for researchers and professionals who work with these techniques.

Baum & Leahy

The Sound of Microbes

Humans have long had a love-hate relationship with microbes – fighting the ones that cause disease, while nurturing the ones that make our food taste delicious. But recent research suggests that the picture isn’t so black and white – the mixtures of microbes living on and in us are vital to our wellbeing in complex and surprising ways. In this podcast your host Louise Whiteley takes you to visit holistic health coach Adina Beer, chef David Zilber, philosopher Joana Formosinho, scientist Mani Arumugam and artist duo Baum & Leahy, asking them: how we can listen to what microbes have to tell us about our health and food systems, about cultivating care across species and societies? The podcast series is produced for Medical Museion, supported by a Velux Foundation Core Group award for ”Microbes on the Mind” and the Novo Nordisk Foundation Center for Basic Metabolic Research (CBMR) at the University of Copenhagen. Produced by Marie Chimwemwe Degnbol and Cecilie Glerup Music by Andreas Markus Appearing in the podcast: Louise Whiteley, Adina Bier, David Zilber, Joana Formosinho, Mani Amurugam, Rose Leahy and Amanda Baum. Correction: In the podcast, François-Joseph Lapointe, Rose Leahy and Amanda Baum are mentioned with mistakes in their names; we apologize deeply.

Sensing Holobiont: Flavourful Rituals for Metabolic Companions (2023)

  • Holobiont = A holobiont is a collection of closely associated species that have complex interactions, such as a plant species and the members of its microbiome.[2][9] Each species present in a holobiont is a biont, and the genomes of all bionts taken together are the hologenome, or the “comprehensive gene system” of the holobiont.[10] A holobiont typically includes a eukaryote host and all of the symbiotic virusesbacteriafungi, etc. that live on or inside it.[9]

Welcome hungry holobionts, assemblages of microbial and human cells. Micro and macro oddkin: Odd in size, kin in cometabolism. Let your billion mouths body absorb this world of symbiotic becomings, taste its potential and digest it into new and tender recipes for reciprocity.

Combining novel gastronomy, interactive installation and microbiome research, Sensing Holobiont explores the vital connections among species, bodies, food and the environment. Taking cues from the growing movement in the sciences to recast multicellular organisms as ‘holobionts’ the work asks: How might a multisensorial ceremony help us to recognise and realise our holobiont selves? And how might this realisation change our relationship to our bodies, to eating, and to planetary health?

Watch video teaser

A holobiont is an ecological unit consisting of a ‘host organism’ – animal, plant or fungi – and the associated microbes, viruses and smaller holobionts living in and on it. While implications of the ecological, evolutionary and daily dynamics of holobionts are being increasingly studied, Sensing Holobiont invites us into a shared exploration of the flavourful complexities of being multispecies consortia.

Sensing Holobiont is a work by artist duo Baum & Leahy in collaboration with culinary researchers Kim Wejendorp & Dr Joshua Evans. PhD fellow Joana Formosinho and Professor Rob Dunn contributed conceptual and scientific input, following from their collaboration with Baum & Leahy on Cometabolise: A Holobiont Dinner in 2021. Associate professor and curator Louise Whiteley facilitated both projects under Microbes on the Mind at Medical Museion, and contributed to conceptual development. Project coordinators: Cecilie Glerup and Simone Cecilie Pedersen, Co-creating assistant: Ella Yolande, Creative Producer: Anna Firbank, Soundscape: room 1: Ella Yolande, main room: Sofie Birch. Biomaterials: Natural Material Studio. Custom glass bowls: Adam Aaronson.

project about new material value…

One proposed solution when facing social-economic problems is to make existing technologies and systems adaptable by introducing biological principles. From self-replicating products to complete infrastructures, organic mass will become an integral component in upcoming decades.

Following this thought of a biological driven industry, the standard of our current economic value exchange system will shift from gold to phosphate.

As one of the key elements in biological life, phosphate is required in a wide range of different aspects, such as the construction of DNA and RNA molecules and the activation of the cell’s energy cycle. Once everything will be organic, the depletion of this vital resource will accelerate and in this process become a currency for economic transactions.

Centred around new achievements in synthetic biology the goal of this project is to create and communicate a scenario of an economy that is based on phosphate.

  • an economy based on phosphate….
  • what if it was an economy based on nutrients…

about nature

Look towards Heavens, an immersive installation conceived for planetary-style projection methods and inspired by Walter Benjamin’s essay ‘To the Planetarium’. Within it, Benjamin mournfully comments that the development of astronomical technology has brought about the death of the cosmic experience of the ancients: the more we see, the less we sense; the more we know, the less we conceive.

TECHNOLOGICAL ACCIDENTS, ACCIDENTAL TECHNOLOGIES Joke Brouwer & Sjoerd van Tuinen

Like Nature, Technology is one of our most dangerous words. It’s a metaphysic, a narrative prime mover endowed with supernatural powers.

Such words are never innocent. They are never just words. They are guiding threads for the rulers. For the rest of us, they’re everyday folk concepts. These concepts shape what we see and what we don’t see, what we prioritize, and what we ignore.1 Importantly, they not merely describe the world; they license and guide modern ways of organizing power and re/production. They have real force in the world, because of what they mystify, and because of what they enable. Such ideas present themselves as innocent. They are anything but.

These ideas are ruling abstractions.2 They are ideological constructs that have made the modern world, a kind of software for the “hard” mechanisms of ex-ploitation and extirpation.

Such abstractions are dangerous for two reasons. First, they appear in our imaginaries as agentless forces of history: they are brain erasers for world-his- torical memory. They seem to have “lives of their own” – which they emphatically do not.3 For over a century, these abstractions have seduced the political left no less than centrist and “eco-modernizing” techno-fixers. Technology is par- ticularly tempting; it easily becomes an “idea of mechanical progress, not merely as a necessary development but as an end in itself, almost as a kind of religion.”4

Second, the danger extends beyond false consciousness. Ruling abstractions are material forces, not just ideas but belief structures.5 They are developed, used, and periodically reinvented by the imperial bourgeoisie and their intelli- gentsias to practically reshape the world in ways favorable to the endless accu- mulation of capital. Ruling abstractions are the building blocks of hegemonic ideologies that trickle down to the folk concepts of everyday life. From the Levellers to Blockadia, radical movements have challenged these abstractions. But they must also live with the contradictions – as Orwell underlines. When Lenin moved from the furious denunciation to the critical acceptance of Tay- lorism and Fordism after 1917, he was doing what all revolutionaries must do: wrestle with the contradictions of capitalism.6 Those contradictions are far more than mechanical.7 They are ideological, social, biological, cultural … and plan- etary.

Sometimes demon, sometimes savior, the ruling abstraction Technology conjures something mystical, outside of history yet relevant to it. Its power is the alchemist’s illusion: the magical notion that machinery will produce something out of nothing. My uppercase emphasizes the double register of both Nature and Technology: as ruling abstractions, central to modern mythmaking, and as material processes of power, profit and life. Disentangling and resynthesizing the two moments – the ideological and the material – is difficult.

But these ideas are conceptual hammers of imperial rule and its false promise of Progress. As abstractions, they have material consequences. To liken the web of life to a machine, or the biosphere to a spaceship, is not merely an intellectual problem but a political and ideo- logical project.11 The responsibility of radical critique in the climate crisis is to lay bare the interpenetrating relations of class power, ideology and the forces of production in the web of life. How one thinks about Technology – and there- fore Nature – is fundamental to one’s world-historical conception of the crisis and its origins, and therefore essential to one’s political assessments, “environ- mental” and otherwise.

The dominant intellectual and ideological view fragments the world into discrete concept boxes: Nature, Society, Economy, Technology, Race, whatever. The fragmented worldview – deeply indebted to the Cartesian primacy of parts over wholes – leads to interpretations of the climate crisis through causal plu- ralism, systems theory, and generalized schemes of interactivity rather than dia- lectical interpenetration and totality. In such approaches, parts trump the whole – or the whole overwhelms the parts (two sides of the same epistemological coin). The result is an intellectual and ideological impasse that fails to do what any radical climate critique must: identify the emerging “weak links” in the chains of imperial power and class exploitation in the unfolding planetary crisis.12

Copper

why do we still mines copper?

Copper conducts electricity, bends easily, and is recyclable – which makes it a critical material for most forms of renewable energy, from wind and solar to electric vehicles. But when “clean energy” relies on the extraction of metals like copper, it can also pollute the surrounding environment.

Companies dig huge holes into the ground, going deeper than the water table. Heavy machinery kicks up dust, polluting the air. Chemicals are used to leach the mineral out of ore, and exposed water is forever contaminated. Some operations, like Freeport’s Tyrone mine, will have to pump water in perpetuity, even after there is no longer copper to be found, so that contaminated water from the mine site doesn’t flow back into the wider water table.

As demand for copper increases, local employment could grow.

  • life cycle analysis of copper in iphone… could look up youtube of extraction of copper from e-waste or something….
  • how much copper is there in an iphone, what do they do to copper to get it into the circuit board…

Copper is a tried and tested material – used since Roman times. It has excellent anti-bacterial qualities. On test, after 7 days of immersion in water, 80% of stainless steel and plastics were coated in a biofilm, while copper showed little or no biofilm. Biofilms are harbingers of E.coli 0157 and other microbiological bugs and pose a significant threat to human health. In a recent article Copper is called the Vital Element of Life – “Copper could be more important to the health of an unborn baby than folic acid, giving up smoking or abstaining from alcohol, say, scientists. Trace amounts of copper are present in all body tissues. It is needed to process oxygen, generate energy in cells, allow the nervous system to transmit signals, grow blood vessels and develop skin, tendons and hair.”

Flint

Panning back to the beginnings: flint, of the silicate mineral family and thus a salt, is not only the first tool used by man- and womankind to carve, cut, and dig, but is, more than thirty thousand years ago, also the first substance to be actively mined (an early indication of the circular spiral of our silicate dependency).

Jump-cut to our present-day obsession with silicon and its uncanny valley: birthplace of the integrated circuit, the microprocessor, home and HQ of countless Fortune 1,000 businesses, a lot of capitalism, and a growing hamlet of neural networks. The metal-oxide-silicon field-effect transistor, or MOSFET, was invented in 1959 and has since become the most widely manufactured device in our history, ushering in the Silicon Age.

DOWSING

Method of finding things, often hidden or underground, with a simple device such as forked stick or a pendulum. The dowser holds the tool and watches or feels for movement that indicates the sought material or obiect. Perhaps most commonly known as a way to find underground water sources, dowsing has also been used to find petroleum, gas, and other minerals; lost obiects; locations of secret treasures or mines; and even missing people-although most dowsing is performed for nonliving things. The common image of a dowser is that of a man holding out before him, by its forks with stem pointing ahead, a Y-shaped stick or “divining rod” and walking around until the stick quivers and points downward. The place pointed to is where the water or other object of the search may be found. Good dowers are said to be able to tell how deep the water is and to gain a general impression of quantity from the way in which their stick moves.

Not all dowers use forked sticks. Some use a pendulum suspended from a thread or chain. The pendulum is allowed to hang straight down and is often held over a map. When the pendulum begins to move, it leads the dower to his or her object. Other things may also be used as dowsing tools; it is thought that the power of the technique rests not so much in the tool as in the user. Some dowsers use no tool at all.

Dowsing has been done for centuries. Recorded descriptions of it go back at least as far as ancient Egypt, and it was commonly used as a way to find water and other things until the 20th century, when scientific skepticism dismissed it. Most scientifically minded people consider it more of a superstition than a true detecting technique. Even so, some petroleum companies, govern-ments, and water-well drillers still use professional dowers today to help them in their work. It is extremely expensive to dig oil and water wells, so employing a dower may be considered adding to the probability of the accuracy of the geological reports. Some claim that dowsers are more accurate than geological reports.

One explanation for dowsing is that the dowser, more sensitive or more perceptive than others to subtle energies emanating from different elements, is able somehow I° tune in to the energies from the sought object; the dows ing tool may enhance and focus this energy for the dowser. One problem is the apparent subjectivity of the craft: Different dowers use radically different methods and often arrive at different conclusions. This inconsistency, along with the inability of science to verify the supposed subtle energies, calls dowsing into question. Skeptics suggest that dowers who do find water, oil, or treasure have merely been lucky.

Another term for a dowser is “water witch,” reflecting the historical view that dowsing is a paranormal ability akin to witchcraft and occult divining.

For further reading: Christopher Bird, The Divining Hand (E. P. Dutton, 1979).

ALCHEMY

Derived from the Arabic al-kimia, the Egyptian art that strove to change substances from the known and commonplace to something other in the attempt to uncover universal secrets. It began in ancient China and was practiced in Asia, the Middle East, and Europe for millennia until it gave way to modern science about 400 years ago. It was based originally on the idea that everything was made up of four elements earth, air, fire, and water– -mixed in different proportions in different sub-stances; changing their proportions would change the substance, also known as transmutation. Medieval alchemists searched to uncover the following universal secrets:

  1. the elixir of life, which would confer immor-tality;
  2. the panacea, which would cure all ills;
  3. the philosopher’s stone, which would turn base metals into gold; and
  4. the alkahest, which would melt anything and be very useful in experiments and also in war.

Although regarded with some disdain today, the work of the experimental alchemists should not be dismissed lightly. In their searches they heated, pounded, mixed and tested everything they could find and in doing so discovered much about many different materials; they established many of the chemical processes

  • distillation,
  • fusion,
  • calcination,
  • solution,
  • sublimation,
  • putrefaction,
  • fermentation
    that we take for granted today. They accumulated expertise and knowledge that formed the basis for much of modern chemistry.

However, there was one striking difference between the new mechanical philosophers and the older alchemists: The mechanical philosophers were opposed in principle to secrecy and increasingly adopted a conception of knowledge as something for the public benefit. They believed that everything should be published and open to public scrutiny. In this way obscurities and mistakes could be exposed and eliminated in critical public discussion. One figure in this story is especially interesting Isaac Newton, perhaps the most famous natural philosopher of the 17th century or any century. His achievements are taken as paradigms of scientific research. His published work was disciplined in method nothing was claimed that had not been argued for by a combination of induction and deduction, the latter modelled on the deductive method of geometry.

  • I’m seeing a correlation between alchemist secrecy and modern corporate opacity – lacking transparency.
  • inductive vs deductive reasoning in geometry – the former is coming to conclusions based off observations while the latter is coming to conclusions based on pre conceived facts.

In his private life, however, Newton was deeply interested in alchemy. He took copious notes on alchemical books and manuscripts and he carried out prolonged and detailed experimental studies, believing that his own experiments would be most productive if they proceeded in conjunction with the study of records of the ancient past.

As part of his natural philosophy, Newton was interested in the interactions of very small particles, knowledge of which he believed to be hidden in allegorical form in alchemical writings. It was the most mythical alchemical writings that he thought were the most important to study as these were thought to represent the oldest part of alchemy.

Newton’s studies and experiments provided important insights into what was and was not possible by alchemical manipulations. Nevertheless he never published anything directly concerned with alchemy.

Today we tend to regard alchemists as “knaves and impostors,” happily now a thing of the past. However, like Newton and the contemporary mechanical philosophers, we should draw a distinction. There were two distinct groups: the genuine seekers after knowledge to whom today’s scientists are indebted for their contributions to scientific understanding, and the rogues and villains who exploited claims to secret knowledge for their own ends, the pseudoscientists of their day.